COVID-19 analysis on usegalaxy.★
Genomics
Cheminformatics
Proteomics
Data
Webinars
Edit on GitHub (opens new window)
Genomics
Cheminformatics
Proteomics
Data
Webinars
Edit on GitHub (opens new window)
  • Global platform
    • What is this?
    • Workflows for discovery of sequence variants
    • Application of workflows for analysis of intrahost variation
      • Selecting data
      • From fastq to variant lists
      • From variant lists to Biology
    • Continuous analysis of pandemic data with the Galaxy API
      • Processed COG-UK data
    • How do I use it?
      • Import History with an auxiliary datasets
      • Upload your data
      • Organize your data into a collection
      • Run workflows
      • Using existing Jupyter notebook
      • Using existing ObservableHQ notebook
      • What if I want to modify workflows?
    • Methods
      • Analysis workflows
      • Calling variants in haploid mixtures is not standardized
      • Benchmarking callers: lofreq is the best choice
      • Supplemental Table 1.
    • Examples of other analyses from our notebooks
  • No more business as usual
    • Pre-processing
    • Assembly
    • MRCA
    • Variation
    • Annotation
    • RecombinationSelection
    • Deploy

Global Platformnew

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

PLoS Pathogens 2020

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

Evolution

Sites under selection

  • Natural Selection Analysis
  • Analysis
  • Visualizations
  • Observable Notebooks

Artic

Amplicon based data analysis

direct RNA-seq

direct RNA-seq data analysis

  • Pre-Processing
  • RNA Epigenetics